NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245212_100086

Scaffold Ga0245212_100086


Overview

Basic Information
Taxon OID3300029704 Open in IMG/M
Scaffold IDGa0245212_100086 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37461
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)139015
Total Scaffold Genes120 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)109 (90.83%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073574Metagenome120N
F074898Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0245212_100086105F074898AGGAGMRKILSLLLILALFLPCALAETPQGIDLALTSTYGDGLSLRMTAGLGETPFCSLTLPSGQIDLAFSPDKGLCVQSGGQWAQLLVEGHPVDAALLTTPLKLLDGRSPSEVLGLLAEDVNKMLDAIPSLNNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRLAASVLGKIYSMEYLDGLNFSDIYHHLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFRQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFQLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTSESPVIPDTLGTIELTQLLDDLF
Ga0245212_100086109F073574AGGAGMLLPAAVRPYAADVDGTASRVRCAIVLNGSKELRIQLCGRLKRGLFGRNQLLADGDVLCVALHQPDGDVPLFDSRCDGYENVLDDRQPPVPIPLHPAICPKCRNAAFQLRLTFEYPEAEELAAFANPDNMFTWVWLSLRCTRCHAVFRGDLECD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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