Scaffold Ga0257130_101960

Overview

Basic Information

• Taxon OID: 3300029645
• Scaffold ID: Ga0257130_101960
• Source Dataset Name: Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 755
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009211	Metatranscriptome	321	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257130_1019601	F009211	N/A	KPRVRIYDYNQDIGSNYYQPMIKYINQKEIYGPYMEKKAVEMPERAEIGSNKYSNMRYDDKSNVNIDLDDFLVKAYAKQIKELNSSTAMARVTMARAAVSMRPSAHSPLDNVSTKYNPIRLLKGAPPGQDKVNFYASELGISRMHREKQKKKNDHHLFGIEAYGDYDYHHNFFEGAVNRDMRFWEPELVRNYTKMI