Scaffold Ga0222749_10001899

Overview

Basic Information

• Taxon OID: 3300029636
• Scaffold ID: Ga0222749_10001899
• Source Dataset Name: Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10138
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030261	Metagenome / Metatranscriptome	186	Y
F081834	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222749_100018991	F030261	GAGG	MKPFWCVMAGLILVGVVGCASMPGAPGTPIADTAVIVGKWAGTVTPGDEPFYLTINPGGTLTAAWGSNMAWGTVMVRNGLATFEMQPGAYEGSIRLYDDGRTRQIVLEDSWASLNARVVP
Ga0222749_100018993	F081834	AGGAGG	MSGKAWLTVGLSVLLGIGVTGATPGMGVRAAQAESGIARGIMTGHGAQVQAARWGDENGEQGEVESPRWGDQNGEQGEVESPRWGDQNGEQGEVESPRSGYQGGDQTDAGSPRT