NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135266_113044

Scaffold Ga0135266_113044


Overview

Basic Information
Taxon OID3300029632 Open in IMG/M
Scaffold IDGa0135266_113044 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Pacific Ocean - SMB3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)548
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)34.536667Long. (o)122.141667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001416Metagenome / Metatranscriptome699Y
F017146Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0135266_1130441F001416AGGAGMPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFN
Ga0135266_1130442F017146N/AFPVTIRRTGLLTGIGGSMLSGSGGQMRITRKMKSQYRAVLNLAQGDYDQAAAMIGVSTDMFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMKRASTTLISNK

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