Scaffold Ga0135266_102454

Overview

Basic Information

• Taxon OID: 3300029632
• Scaffold ID: Ga0135266_102454
• Source Dataset Name: Marine harbor viral communities from the Pacific Ocean - SMB3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1033
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 34.536667
  • Long. (^o): 122.141667

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007750	Metagenome	345	Y
F046309	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0135266_1024541	F046309	N/A	VSQSRSTGDIGTIKKSIQTLNNRINGLNSPKLNDELLTYAIKQQNGAMHPPKQDFGG
Ga0135266_1024542	F007750	AGGA	MAFLGDFGKFFGLGSSEEVLGDVGEVIAGKPGRFVGEGIARATDNLAGDGGISPASTADQALEQSAVSVSKRGDLPQELSTMTGTRGMVQQAGFGALAPLFGTASRFLGSKSGQLVTGVGTAVGLGGASFMGSDSRMKPVLTQSRRNKAKVRQLVNFLGIEGTANFLSQSMNIKVSPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTKTTRRAPVRRASSTTLIKN