Scaffold Ga0135266_101861

Overview

Basic Information

• Taxon OID: 3300029632
• Scaffold ID: Ga0135266_101861
• Source Dataset Name: Marine harbor viral communities from the Pacific Ocean - SMB3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1105
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR1-KM17-C101 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 34.536667
  • Long. (^o): 122.141667

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012934	Metagenome	276	Y
F021435	Metagenome	219	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0135266_1018611	F012934	N/A	MNSLEILKAKINLKTTLIKFKSSLEELREKHEDRTDLIESMQESANDIEHFHSVFLQFEDEYYLECKANMRNQIIIAEHKHEIDKLNKLVENLKKGI
Ga0135266_1018612	F021435	N/A	MKCPQCSQAINWQEQHEYEDFNLEGEGIINVHNCTNIDCNVEEVYIFQKDL