Scaffold Ga0135266_100168

Overview

Basic Information

• Taxon OID: 3300029632
• Scaffold ID: Ga0135266_100168
• Source Dataset Name: Marine harbor viral communities from the Pacific Ocean - SMB3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1697
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 34.536667
  • Long. (^o): 122.141667

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001689	Metagenome / Metatranscriptome	651	Y
F007093	Metagenome	358	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0135266_1001682	F007093	N/A	MISMPGMPSVKHTAELWFDEAKCEARRVVIENGIIDMATEQGINPVFTQTWCLESSMFVISNS
Ga0135266_1001683	F001689	AGGAG	MKLKKEYEMTFKEGFRLGVRLTRAKCYIENARDAKRLGDNTMADLYTEFAQEWNELARNAGRKFTPSVAHEPEQSAFDFGDIEMQEHLTKLPHQLKETG