NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245124_1002376

Scaffold Ga0245124_1002376


Overview

Basic Information
Taxon OID3300029622 Open in IMG/M
Scaffold IDGa0245124_1002376 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35733
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17677
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (24.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057001Metagenome137Y
F058555Metagenome135N
F083452Metagenome113N
F102167Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0245124_100237619F102167N/AMDINQIKTYLPSGWDVVDLIDHGIIDLDIMNEKMMGEYVAVLMIKSYDKITESHNLTTFSFHDKDISGLRRLVSNAIMAVGLRNNPLTGDGNTAIK
Ga0245124_100237622F083452N/AMSGRIKIKPKNKDKKPKIDVFKVIEDRFKNMNELRDMIDMDPKKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR
Ga0245124_100237627F057001AGGVPIQVPRARANLMTSKDLNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKDNDIKVDKAIVPALVALAREKEMVIQLCKEILPRVNNTFCAYKEVEREYFDKLDQDKNIKMTVDKIESIAILGTNHKRFGYNDPTEYDGGVYYDVFNGSDKRIVKCAVPIKRYTFNLIAKCVTYYLTHPKNER
Ga0245124_10023764F058555N/AMSGTKIALLQKMKSNFDKILTEKYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIRIALSDIVKYKHKASKVPRIKDMFVKKGESIYTCIDKNLDSDSRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVVNTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG
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