Scaffold Ga0245130_100011

Overview

Basic Information

• Taxon OID: 3300029620
• Scaffold ID: Ga0245130_100011
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35980
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 460136
• Total Scaffold Genes: 448
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 395 (88.17%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F068856	Metagenome	124	N
F077320	Metagenome	117	N
F082714	Metagenome	113	N
F102166	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245130_100011110	F082714	AGGA	MVVGIRFAADAPVRTVLQAVLLIFPTADVDFLVREYWVCTFGNGLPERRFTAQEMRRALDALTPDEHAELFTIYVLPHNAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSGEQLRAVIETLRKAVEIRSVEAVERKTLARWQF
Ga0245130_100011158	F043945	AGGAG	MKHNLRMAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLSGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAQYGLYVIAKDKTDEYQIVWFDLDTGKGAMMEFALEDDENSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGGVE
Ga0245130_100011272	F068856	AGGAG	MKRLTSILLALLMLVGMALAEEKSDPILGDWYALPSDETVLRLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPAPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLTYTPEMGERQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQTADGSLYATLRLSDVPDNPTTMFLLVPMEKE
Ga0245130_100011278	F102166	GAGG	MKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEAMVDYITEIANGESADNVFAMWQADIGAV
Ga0245130_100011314	F043413	AGGGGG	MTERELREKLQFAYGTMPDATRAAFEHSLTHHRVETRHPARMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNETYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDETGSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRKHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFPAAYTEDEICQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE
Ga0245130_10001134	F077320	AGGAGG	MKRKGMHRRRKLVLLAVLLIMVGIAVWRIWQTPRPTVLHRQDAWLSSAEPEMVDVLPDNTFTAELPEKIDGRLLYIRDYSASGHYQIVWEGVSAEAAEVYLNALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEEPTTTPLP