NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245150_100118

Scaffold Ga0245150_100118


Overview

Basic Information
Taxon OID3300029613 Open in IMG/M
Scaffold IDGa0245150_100118 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36453
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)148916
Total Scaffold Genes129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)116 (89.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042910Metagenome157N
F059982Metagenome133N
F101191Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0245150_10011812F101191AGGAGGLLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTLKQARKPLSRLCWIGTTSRGLLVIELRNPLCISGASLTSVPDGAGRLPFTFLAQSDRPGDVNLPARLYWWKEETHDAA
Ga0245150_10011814F042910AGGAGGLADRLYCALNGTTLRDLDARIHLLDVEELAPTVRTVTASRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTIAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPESADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC
Ga0245150_10011881F059982GGAGGMRRMTRLLCLMLLFSLITFSCPLAEETDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMTEGRITLVRGDSRVVAMVISRVPDADPAAALPVLMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSRDGAAVYVAEDAAATASPEV
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