Scaffold Ga0245127_100056

Overview

Basic Information

• Taxon OID: 3300029612
• Scaffold ID: Ga0245127_100056
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35741
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 169994
• Total Scaffold Genes: 218
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (22.94%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F089054	Metagenome	109	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245127_100056193	F044555	N/A	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNIPTVPDLEKPIGIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0245127_100056198	F105375	N/A	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTFNGAADALVNFAMNFTDGEANIKPINRISSNIMQITFTV
Ga0245127_100056200	F064817	N/A	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0245127_10005680	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVLLGFTWFKLLGVALMILLWPIVFIYALNDGIGGYPFKKYAIPYTFILVAWFIIFLYGLVS
Ga0245127_10005682	F080163	N/A	MKTIKFLQESFETKERFQQEISIKYSYNLDIVESIDFRINRRNIKYFYEAMQNFENSLVDEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEVLDSEIELLQEKLNLIREELCELIGIDPNLQKKGMKKIIFFNLNLYSNNQIGFLLQATEL
Ga0245127_10005686	F089054	N/A	MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPHQEINKNHLHSEFIRLRLREILQINLSDITIIDIIPLP