Scaffold Ga0245152_100005

Overview

Basic Information

• Taxon OID: 3300029608
• Scaffold ID: Ga0245152_100005
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36473
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 439619
• Total Scaffold Genes: 402
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 367 (91.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073573	Metagenome	120	N
F095494	Metagenome	105	N
F096287	Metagenome	105	N
F101192	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245152_100005117	F095494	N/A	MQYHIVKGGFFVSDPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEATRTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDALRQHIAAAHQKNERKRQKRKKIIAAAACSAAAIAVAFAVSRPLLWYENWTTADEQQHFVTSHEIAIEMLETAVADPTLPSGDTVEVQSIAALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGISISLMYVNAADTQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGDDKLLLFSGRTSQEEVTSLLRTIIREIGE
Ga0245152_100005347	F073573	AGGAG	MPTIVSFYQRFPNEAPPLNLSAFDHTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRVRPRGGEIEALPRVMLSVYSEEMLFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIHRFCMDCEESTITYQPAFLWYKDYCTKA
Ga0245152_100005350	F101192	GGAGG	MTYWGWLLVGIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKDAPTSFTPCGEDTIRRWVSGRYQIALRFNRYDICLGVEEEIDG
Ga0245152_10000559	F096287	AGGAG	MQRIQKRRAGQRQTQNALIGLLSAVSMTRVGLTQLLPLCGSAAWWLSAACMLPGLCVYGALRLLLRHTHTRTLTDCARKLLGNFGIILIMLTLTLPLLLDGIASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNRDGLPRGVYLLRHVLLVAAAIIAINALLDAHPDGIVPLLGEGVPPLKNGFRSSWGMSWMLLLLLEFPAEEGTRRTPAMFVALLPCPVILLLLSLSIPPELTVPGRSLASRLALPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYALIGLLTLTQLFDISRLWRVLTALTAWSLVPGVLLLLVLTIARLCRREKA