NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245152_100005

Scaffold Ga0245152_100005


Overview

Basic Information
Taxon OID3300029608 Open in IMG/M
Scaffold IDGa0245152_100005 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36473
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)439619
Total Scaffold Genes402 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)367 (91.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073573Metagenome120N
F095494Metagenome105N
F096287Metagenome105N
F101192Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0245152_100005117F095494N/AMQYHIVKGGFFVSDPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEATRTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDALRQHIAAAHQKNERKRQKRKKIIAAAACSAAAIAVAFAVSRPLLWYENWTTADEQQHFVTSHEIAIEMLETAVADPTLPSGDTVEVQSIAALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGISISLMYVNAADTQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGDDKLLLFSGRTSQEEVTSLLRTIIREIGE
Ga0245152_100005347F073573AGGAGMPTIVSFYQRFPNEAPPLNLSAFDHTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRVRPRGGEIEALPRVMLSVYSEEMLFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIHRFCMDCEESTITYQPAFLWYKDYCTKA
Ga0245152_100005350F101192GGAGGMTYWGWLLVGIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKDAPTSFTPCGEDTIRRWVSGRYQIALRFNRYDICLGVEEEIDG
Ga0245152_10000559F096287AGGAGMQRIQKRRAGQRQTQNALIGLLSAVSMTRVGLTQLLPLCGSAAWWLSAACMLPGLCVYGALRLLLRHTHTRTLTDCARKLLGNFGIILIMLTLTLPLLLDGIASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNRDGLPRGVYLLRHVLLVAAAIIAINALLDAHPDGIVPLLGEGVPPLKNGFRSSWGMSWMLLLLLEFPAEEGTRRTPAMFVALLPCPVILLLLSLSIPPELTVPGRSLASRLALPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYALIGLLTLTQLFDISRLWRVLTALTAWSLVPGVLLLLVLTIARLCRREKA

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