NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245111_1000012

Scaffold Ga0245111_1000012


Overview

Basic Information
Taxon OID3300029588 Open in IMG/M
Scaffold IDGa0245111_1000012 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35578
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)435808
Total Scaffold Genes399 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)365 (91.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073573Metagenome120N
F096287Metagenome105N
F101192Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0245111_1000012345F096287AGGAGMQRIQKRRAGQRQTQNALIGLLSAVSMTRVGLTQLLPLCGSAAWWLSAACMLPGLCVYGALRLLLRHTHTRTLTDCARKLLGNFGIILIMLTLTLSLLLDGIASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNHDGLPRGVYLLRHVLLVAAAIIAINALLDAHPDGIVPLLGEGVPPLLSGIRSSWGMSWMLLLLLEFPAEEGTRRTPVMFVALLPCPVILLLLSLSIPPELTVPGRSLASRLALPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYALIGLLTLTQLFDISRLWRVLTAFTAWSLVPGVLLLLVLTIARLCRREKA
Ga0245111_100001252F101192GGAGGMTYRGWLLVDIALLLTALSGTQTSLCQRMRSVTVYRGLTYWEVQQLARTAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG
Ga0245111_100001253F073573AGGAGGMPTIVSFYQRFPNEAPPLNLSAFDRAGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMLFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIRRFCMDCEESAITYQPAFLWYKDYCTKA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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