Scaffold Ga0245123_100030

Overview

Basic Information

• Taxon OID: 3300029583
• Scaffold ID: Ga0245123_100030
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35723
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 272628
• Total Scaffold Genes: 246
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 217 (88.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F082714	Metagenome	113	N
F102166	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245123_100030200	F102166	GAGG	MKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYCIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSDPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV
Ga0245123_100030236	F043413	AGGGGG	MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRHPVRMSRRMRTIVTFALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDGTGSWSDSPFGFDGVLWDDDMQSPPEGTPIAWTMTFELLQPVWEVEYLSDAQYQALLAGGADTLEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEQLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELAGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDACHPDAEKGFTLELQE
Ga0245123_10003032	F082714	AGGA	MVVGIRFAADSPVRTVLQAVLPIFSTVDVDFLVREYWVCTFGNGLPESRFTAQEMRRALDALTPDEHAELFTIYVLPHNAPSTPPSSCEDFCARGFTMAFYAYDGDEYALLAQSGEQVEAAFEALTTAGLCEKVEEVEKETLAHWGF
Ga0245123_10003081	F043945	AGGAG	MKHNLRMAFLSLLLVLTLGVMLAFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAQYGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDDENSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMDYDEETSEFGEPHGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGEVE