Scaffold Ga0245007_103599

Overview

Basic Information

• Taxon OID: 3300029578
• Scaffold ID: Ga0245007_103599
• Source Dataset Name: Human fecal microbial communities from Shanghai, China - P094V1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8921
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location

• Location Name: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051935	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245007_1035991	F051935	AGGAGG	MKRLLGLLMAVMVLMGGISCAVAENANPLVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVAAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDSTYIYFDFVDENQTEWELVLNLSTVYVSYFRMIYTAEEYGITEIVFNYERGVDFQFDAPFYFRLSYDVDPAKSLSFGVADFELATCPLSMREFLVPAVVSCGEEGAGLYIMAKQGIQPILVLADGEMIEAIPQRWQRDWVIVCYRGNYLFMKTENCKMEE
Ga0245007_1035998	F051935	N/A	LIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWTLQNFSAIGYGNSDSADVYFYFSDENQQSWELVMELGDANVSYFSLIYNAEGYGITEIIMSYDCGMKFQVDAPGYLQLSYEVDPVEEYSCRVEDFDLATCPLSMQELLVPAVVSCGEAGAELYIALQQNIQPIFVLADGEAIEAIPQRWQRDWVIVCYRGNYLFMKTENCKMEE