Scaffold Ga0245007_100005

Overview

Basic Information

• Taxon OID: 3300029578
• Scaffold ID: Ga0245007_100005
• Source Dataset Name: Human fecal microbial communities from Shanghai, China - P094V1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 485450
• Total Scaffold Genes: 433
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 400 (92.38%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location

• Location Name: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F095494	Metagenome	105	N
F096287	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245007_100005209	F095494	N/A	MQYHIVKGGFFVSDPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEAARTDAPTDETKIHICMDLLERLQGEQKPIAPARVDALRQHIAAAHQKNERKRQKRKKIIAAAACSAAAIAVAFAVSHPLLWYENWTTSDEQQHFVTSHEIAIEMLETAVADPTLPSGDTVEVQSIAALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGISISLMYVNAADAQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGDDKLLLFSGRTSQEEVTSLLRTIIREIGE
Ga0245007_100005268	F096287	AGGAG	MQRIQKRRAGQRQTQNALIGLLSAVSMTRVGLTQLLPLCGSAAWWLSAACMLPGLCVYGAFRLLLRHTHTRTLTDCARKLLGNFGGILIMLTLTLPLLLDGAASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNRDGLPRGVYLLRHVLLVAAAIIAINALLDAHPDGIVPLLGEGVPSLLSGIRSAWGMSWMLLLLLEFPAEEGARRTPAMFVALLPCPVILLLLSLAIPPELTVPGRSLASRLALPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYVLIGLLTLTQLFDISRLWRVLTAFTAWSLAPGLLLLLVLTIARLCRREKA