Scaffold Ga0311280

Basic Information
Taxon OID	3300029569 Open in IMG/M
Scaffold ID	Ga0311280_100315 Open in IMG/M
Source Dataset Name	Moderately acidic thermal spring sediment microbial community from Yellowstone National Park, USA - MV2 Spring
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029569 Open in IMG/M

Scaffold ID

Ga0311280_100315 Open in IMG/M

Source Dataset Name

Moderately acidic thermal spring sediment microbial community from Yellowstone National Park, USA - MV2 Spring

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Wisconsin, Madison

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11198
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (100.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

11198

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (100.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp.	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Thermal Spring Sediment Microbial Community From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Thermal Spring Sediment Microbial Community From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Yellowstone National Park, Wyoming
Coordinates	Lat. (^o)	44.61003889	Long. (^o)	-110.43943056	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Yellowstone National Park, Wyoming

Coordinates

Lat. (^o)

44.61003889

Long. (^o)

-110.43943056

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013613	Metagenome / Metatranscriptome	269	Y
F057170	Metagenome / Metatranscriptome	136	N
F076880	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0311280_1003151	F076880	GAGG	MAQVKEEAKAVRAFVLRIVKGYRAFLRTEVVFPDGLPWDHASELADRLYYAYYVAYYHISSDETELIRRLAQVSYNDFNELKAVWGSFSESQKVKALRQLLYAIAKIGYEELLDTIANSWEFKTKDDVRRQIIEAFKSYIANDHDRIGLAVALVNIFWPNEEARKESEDRIIALWHGLSLDKYIPWDKVEKLIEKHILSAEALKAVEGTAETR
Ga0311280_1003152	F057170	GAGG	MSTKGLIEVFDSKNDLLAKIYVHGDMYPNNGMMCEVSRFLSKRLLVNGIPPDGHFKVVNGMDNLAALIVTHLVNWNTKGIRRITNVKRNDLAAGFVYLYPFNLDIKGTDVEYIYELHPMMDVEKLVYPGGARETLDVIRVVAKRYEWWDGKGPMDVFDGSLRDFAKQYCKI
Ga0311280_10031521	F013613	AGGAGG	VPRPRKFNDGGTVISTYVPHELYEKVKALAETKGKSISEVACELIRRGIEAGGASAADPPDPPDALQRSLKSLEPLDRERVIQFMKELEEAEARLAKLRPDDIKLARAGRASSGEVVSLRKTVFDLRHTYERTIKRNVRSPDVLDIIGERLLELMKELGVPV
Ga0311280_1003153	F076880	GAGG	MAQVKEEAKAVRAFVLRIVKGYRAFLRVGDVFPNEPWAHAYDLADSLYYAAYSDIDSSDETELIRRLAQVSYNDFNELKAVWDNFNESQKKKAFKQLLYAIAKIGYEKLLDAIANSWEFKTNADKRRQIIDAFKSYIANDHVNSRIRLAVALIDIFWPNDKVRKESEDRIIAFWNGLLLDSYIPWLKVEKLIEKHIISAETLKAVEGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0311280_100315

Overview

Ecosystem & Geography

Associated Families

Sequences