Scaffold Ga0244886_100321

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0244886_100321

Scaffold Ga0244886_100321

Overview

Basic Information
Taxon OID	3300029567 Open in IMG/M
Scaffold ID	Ga0244886_100321 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Shanghai, China - P013V6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	57632
Total Scaffold Genes	102 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	96 (94.12%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location Name	China: Shanghai
Coordinates	Lat. (^o)	31.2112312	Long. (^o)	121.4647709	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067720	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244886_10032192	F067720	AGGAG	MASITYEHPGGFTEMYAAQKQFRDITKMVCARLRGLTKTYHFAVIGNMVRNAGQLPQPFWLGAACGGGSHSLSASVART

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