Scaffold Ga0245041_100168

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0245041_100168

Scaffold Ga0245041_100168

Overview

Basic Information
Taxon OID	3300029554 Open in IMG/M
Scaffold ID	Ga0245041_100168 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Shanghai, China - P112V1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	86395
Total Scaffold Genes	118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (22.88%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location Name	China: Shanghai
Coordinates	Lat. (^o)	31.2112312	Long. (^o)	121.4647709	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089054	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245041_10016878	F089054	N/A	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSKHIRLQIREMLQIPLRDITIIDIISLP

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