NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245046_100177

Scaffold Ga0245046_100177


Overview

Basic Information
Taxon OID3300029533 Open in IMG/M
Scaffold IDGa0245046_100177 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Shanghai, China - P114V6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66763
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (86.84%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location NameChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088920Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0245046_10017714F088920N/AVSANLHHYPAFGAGVILHLILHFSQKAAIFAPKRVILLLFVPTLFFAGLSVLSPQTSPKISGQTSLYQPWLSPYCLFKDQLEMR

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