Scaffold Ga0244821_104102

Overview

Basic Information

• Taxon OID: 3300029523
• Scaffold ID: Ga0244821_104102
• Source Dataset Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005388-57
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5791
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Sampling Location

• Location Name: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050793	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244821_1041027	F050793	GGAGG	MRETGAIAPNDAEREKTMRKYEVDVPENVEMADIQAIQTRVKKHNLLTVALLIPLFAGYALRESSETLGGIVFVLSIALMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGTWENDEQDEVFPTLADVREYATQEGYEPMDVDFEQMTDEEFQQFLDAHRI