Scaffold Ga0244172_104523

Overview

Basic Information

• Taxon OID: 3300029470
• Scaffold ID: Ga0244172_104523
• Source Dataset Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001930-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3237
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Sampling Location

• Location Name: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F080163	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244172_1045232	F080163	N/A	MKTIKFLQESFETKERFQQEISIKYSYNRNTVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCDAKQFLESINDFDKIIFVIIIYMKTYFNFCKDYSKISLHIHLVQFNFTTSILIQGFYNYNHRDLSFSTKLKSQVLDSENELLQEKLDLIREEICELIGVDPNLEKQGHEDNYVFNLNIESDNQIGFFLQATEL
Ga0244172_1045234	F032312	N/A	MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAIVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS