Scaffold Ga0183755_1065937

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1065937
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 832
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010318	Metagenome / Metatranscriptome	305	Y
F052274	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10659371	F052274	GAGG	MNRTLYKKLEDICAREYILSKLSATKFRTFVDFLYDDIRTWDEPM
Ga0183755_10659373	F010318	AGGAGG	MNVDSDKPRYLECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVDFKDGTSESYYNGNVGETDYKWAVRESILTEGWDLVEGLN
Ga0183755_10659374	F003976	GGAGG	MSRLYNDYYFEKEDVLDTLEKLGMSVRLLNIWVNEPMGLENARYILEKNANKKLPWFSKAMVKELIEEEAQXMLIAINQDT