Scaffold Ga0183755_1044029

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1044029
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1178
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F011410	Metagenome	291	Y
F015532	Metagenome / Metatranscriptome	254	Y
F023621	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10440291	F015532	GAGG	MTLIKDNKGVRKEIPNRMMSATFALPIDGRKVIGILNYVASDTGITPMAFWIKLKPTDSYLDRELRASGKLISRCLQNSE
Ga0183755_10440292	F011410	GGAG	LKDLKIKLEWSTSDLLVWTVLGVGIGFCIVNLITIYNIYSVIETMWLEIQQVKETNISLYQFIEAHNNDFD
Ga0183755_10440293	F023621	AGGAGG	MDEKRRNDMSLMEKRIDNILKAMRDAKDYEMKSIWNRKLQQLFEVRGRKAFERLEDQARMVH
Ga0183755_10440294	F003020	AGGAGG	MPDISKFKSVSVSMDTHQKLSSLAQNKFEVPVSVQKIIEYLLQKELKKKNGRSNGKTRS