NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1027938

Scaffold Ga0183755_1027938


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1027938 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1716
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F010001Metagenome / Metatranscriptome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0183755_10279383F000464N/AMKLNRQQKMRLYSHAPGPHDHDSDFEDEFWPIMGILFAIICVWTGIVHFIDWATLDVIPWWAEPFTIAPVVFLLIMKEKYDSLNPLHWWPMFWGYQAKLPDEDRITIRPTDVERIMQQHGGPINVHIIDFEHIKFRRKKDAVIFGLRYF
Ga0183755_10279384F010001AGGMDKANNLELLKAQIGNLEVQNADYQQIVKELSDKLKLYEQKHGTVFKRSRNISNQR

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