Scaffold Ga0183755_1027758

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1027758
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1725
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F021402	Metagenome	219	N
F077486	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10277581	F001839	AGGAG	MKTFEKFDSYLLNNKVLTANEKVVYLICKSFENAPQGCRVSHKYLMDRTGIKTRKTLIKCLDRLTLFGMLARKQINNSTCHYVFDKELMQQYIQHNQNKRRKIKLSKNKNNPQFNQKIDNVIHMVKKDK
Ga0183755_10277583	F021402	AGGAG	MITTNLTIDQLDRFLQISSFCDSKMPKVKAKTLPTMFKVIDNTLGIGDDKDSIKYSDKHLARLKITLTSRQITIYDFIAVLMLDATEKDRELIYLRNFPQRKSLRQMRRMYLDWSHTKIGYEYNKALIAVCKIANKNLKKYLTS
Ga0183755_10277584	F077486	GAG	MLNQLDSLLTESERNNMFENNKILTNPVNMFKIDIVKVFKKKRTLKDILKCKKLQKKHKLQDFKSIL