Scaffold Ga0183755_1018424

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1018424
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2391
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023483	Metagenome / Metatranscriptome	210	Y
F028800	Metagenome / Metatranscriptome	190	Y
F060424	Metagenome	133	Y
F078595	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10184242	F028800	N/A	MKIEIENGYDGFERNVTGNIDLDGNNVYEWELETYDGFTSIYLIDCEVRINLEDEDELHLFNIDEEVGEEIYDEILTYVNDNGYDFIGEEFE
Ga0183755_10184243	F023483	N/A	MNKLHYDFEDITKIYAEALEHETGMPVNNLANVFDYDSYELTYDSLADKIIIKIKGAYVQFEMEDTDIYVVNYGNGSGWQMAYSFAI
Ga0183755_10184244	F060424	N/A	MNKSKMTRANLLEQIETAFNKIYQFTDRMGDEALNVLDEHVTRYNLDKEYSICLEAQIDEYDPVNLSKDTLSCLLDAHLEALADLRCE
Ga0183755_10184246	F078595	N/A	MKSKNGIILSDFEIVENNLLGVNKLLVNKFLELFSSDPDNMSNSKYVNKLNNFLNEINSNYICVNKLSVNDEGEIFWKFKLK