Scaffold Ga0183755_1017749

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1017749
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2460
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F009812	Metagenome	312	Y
F030928	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10177492	F003020	AGG	MPDISKFKSVSVSMNTHNKLINLAQNRFEVPVSVQKVIEFLLEKEMKKRKNGKTR
Ga0183755_10177493	F004988	N/A	MVKLVETICPRCNGNGYIRVQDMIGEDMIEIDCPMCEEEFMHIGMKVKTHNGYVMLPIEQTRLNVEGGRESKIKWSGETLPEVGKL
Ga0183755_10177495	F030928	GGAG	MKSEFKTALEAYINTCILGFAIFTCLIVIVVNSRYIVKLESTINTMWHEIEQVKETNIGLYQFIEEHKNDFD
Ga0183755_10177497	F009812	AGGAG	MEEFEFEIEWTPESANDCFTEIPAHTIDKLCKKKYGHTNWARMGSMSPEELIGNPCDFDYDNGVIYFKSAHMV