Scaffold Ga0183755_1014841

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1014841
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2823
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011191	Metagenome	294	Y
F041489	Metagenome	160	Y
F054421	Metagenome / Metatranscriptome	140	N
F083263	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10148412	F041489	GGAG	MSILVADIKFYKVDDDGNEVLNKEGTHIQLYALKRDVRFKPLEYLCEDMEDDILEEIKNE
Ga0183755_10148414	F054421	AGGAG	MVITKMTSTVADRLREELNIFLSDFVSTHEIEGIKVELGNCSYDEAMAQYQLKIKVDGVETREQKALKMYAKLDGIDLEKKHPYLTLVEFHAKKRQYPYIYVDSRRPNVRFKGSTDWAIRTFGKDNTWQKEMANESSS
Ga0183755_10148417	F083263	GAGG	MKKMTTMNDMFVAYQTHKGYAQQQNLEPIGFKEFTGIFMHFNSVVMHQSVAIYTAAKNSQLGKNQTKETIQ
Ga0183755_10148418	F011191	AGGAG	MKAYFINAKDELIVEVDCKDYYHKKELINCSYIELYPYPVNGNDMWTDEEANLRESNYLFQLDDIIVSGNAIIMSYDDEGDSADVKDLTIEDLKSRVKFKGKRAIDHSKLKFEVIAWE