Basic Information | |
---|---|
Taxon OID | 3300029448 Open in IMG/M |
Scaffold ID | Ga0183755_1013565 Open in IMG/M |
Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3028 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Mediterranean Sea: TARA_023 | |||||||
Coordinates | Lat. (o) | 42.1735 | Long. (o) | 17.7252 | Alt. (m) | Depth (m) | 55 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F026158 | Metagenome | 199 | Y |
F047368 | Metagenome | 150 | N |
F050008 | Metagenome | 146 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0183755_10135651 | F047368 | AGGAG | MPSECGAIKHAHTEDEALKHLAVGNKKKGYKLKRSNVSIIILNIEEIKDT |
Ga0183755_10135652 | F026158 | AGGA | MLHISSTTESKASAVQCIEGFRDKMEMLMKAGDILDHSTGGRSTAEDAQAARERSLEIWKKGETIVEAARQGGAYAQSFRVWLIKEGHHTPRGK |
Ga0183755_10135656 | F050008 | AGG | MNQVNMNKAQRELVMDLAEDFAPFVKKVEGGAALTQNHYGAYGSMISKLSKGNRKLALVFSYALMMSGANGQGIRDAMSAFFPE |
⦗Top⦘ |