Scaffold Ga0183755_1012149

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1012149
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3288
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F009561	Metagenome / Metatranscriptome	316	N
F026154	Metagenome / Metatranscriptome	199	Y
F027854	Metagenome / Metatranscriptome	193	N
F090327	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10121491	F090327	N/A	PQAIFDEWMKTIDPFEDDSPYPLRISQITRAWEKIDNVGKHNYLTRQTNPRYKTMLEQMKGN
Ga0183755_101214912	F027854	AGG	MTDKEAMKLHELIDELRAKLQKSLQEILQLRKDLDLEREEHQLTQLRYDTVKNAINKEVDRLNQRRPDVEIPADEKGIK
Ga0183755_101214914	F009561	GGAGG	MTELKDEHLEIISNNKGKKHEIDKMVEQLSDARESVAVLGNAIECGFLHDKHSLILQDWIVSYEQLIEQLDTHLTEMRTHG
Ga0183755_10121492	F026154	AGGA	MNGIINIVRFVAYSVGGLAVRKAWNWLIEDVDPIPGSKEFDDEYYQTKTKYIRLTKLKEEHEAYRKSRRGNS
Ga0183755_10121497	F003677	AGG	MVDEALYFFEKDVGKKVYEIEYEATYVTKWQVLAEDENEAFNTWLAENKQDLVTEDGKDCVCSYVKDYTQLGKTQVIAEIKYNKEDNEVYADES