Scaffold Ga0183755_1012108

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1012108
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3296
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10121081	F011253	GAG	MKDRKLELNNIIKNFAKNKSLPYSAAITKIKKDRKGYFQAKDIKQKSKSLSTDRFQQ
Ga0183755_10121082	F001839	N/A	MKYFEKIDKDLINNRALNSNEKLIYVICKSFENAPRGCRISHKYLMQRTGIKTQPTLIRCLDRLTLFGMLARKQIENGTCHYVFDKKTMQEYIQHNLNKRRRISLSKNRHNRNLNTALSSPNVINIGKVIK
Ga0183755_10121084	F004990	GGA	MYGDPKKKCCACENGADLKEGNKYYCCDHYALYVLRKPMSQIEKELNND
Ga0183755_10121087	F008915	N/A	MGFIVDNIVSLDLYEMQSASHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGAMGEVALAKFLKIKFEYHCNVGGIPDLIFKDLRLQIRTQLPKDNNKNSLIIRPKAKPGELYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN