Scaffold Ga0183755_1009290

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1009290
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4013
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007227	Metagenome / Metatranscriptome	355	Y
F011088	Metagenome / Metatranscriptome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10092907	F007227	GAG	MKSQGVKKLTKEEIGYKTTDKIRQMWLLNPHDHHFLYVRDDGSFYGFTHMKGEDPEEWFWEPDGIQTELFPPEPPKSHKFTQEQLDRAPHHNILEKYYGKDWKPVPQEGLEDHF
Ga0183755_10092908	F011088	GGAGG	MFVVPEYTCKHPIFPHHNTVDLMYDAIDKHECEQKDWYAYLDFISNNQYDFGGG