Scaffold Ga0183755_1009066

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1009066
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4085
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F010878	Metagenome / Metatranscriptome	298	Y
F031261	Metagenome	183	Y
F068823	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100906610	F068823	GGAGG	MGTYNDYYFEKEEVEATLDKIGLLSRLLGIVYKEQGLDTIKYLVERNSNRKYNWLGDEMMTDIINNMEDKEYEN
Ga0183755_10090667	F031261	GGAGG	MRTKTYVLTVDKHSDQILDQLNRLQEVRNSVSLLNKHSDTKHYVKCQGRWGRKNPNYNHRTIPFCPLADAVKWDVYIYEK
Ga0183755_10090668	F010878	GAGG	MKITAWNLGIVWEDGTEQAIGDLPDWLASRVDEYLNELEEEDED
Ga0183755_10090669	F003051	GGAGG	MKTKILKSKVTIDMSVSEYDTLFKYIGKLDSMLNTLHETNDLWLSDVHNLSSLKWELIEMLDAEWNADTYRYVKRGSK