Scaffold Ga0183755_1008342

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1008342
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4349
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031892	Metagenome / Metatranscriptome	181	Y
F066695	Metagenome / Metatranscriptome	126	Y
F084085	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10083423	F066695	GAG	MAELLTDDIITNALNNDGIMEEPDANWLMEYMNSEYGGTLDNTTSWCDKQHGLKIYSESTYDGYDIWWCTHDERPYVSQDGFYYEDYTEWSSRAIDELTSGGEVWVEPHVWDDMEYEFNHELEQWWTDIYEEYFNDKKDELLDSGDYYEDKK
Ga0183755_10083425	F031892	N/A	MTSLEFNVLVDELDSHAQQTMNKKGPEYTTGNEDVLNNFKSTAKKLGVDPLVIWYAYFDKQVSSVAAHVSNEDLNKAEPMISRFGDIINYAKLGYALFRERDDV
Ga0183755_10083426	F084085	GGAG	MLSLAMHYSEKEMMCKDVMVTLLSLIEKEMKKRIEHSYFEEESDKWSKFHGQLRNIRLTIKNGGIK