Scaffold Ga0183755_1007886

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1007886
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4525
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F021188	Metagenome	220	N
F030928	Metagenome	184	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10078862	F003020	AGGAG	MPDTSRFKSVSVSTSTHKQLESLAKSRFEVPVSIQKVIEFLLSKEVKGKKRAKAS
Ga0183755_10078865	F083388	AGGA	MQKRIANIEWVMKRCNPEFKKVWARKLEQLLERRVEIEYEKTVERARKVH
Ga0183755_10078866	F030928	GGAG	MKKLWKELEKYTSFLILGFTIFICLIVIIVNSRYIIKLENTIETMWHEIVQVKETNIGLYQFIEEHKNDFD
Ga0183755_10078867	F000720	GAGG	MTLIKENKNVRREIPNRMMSATFALPIDGRRVVGILDYTANDTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCMQHGESLKELVDTLSQDNVVGQMANYLYKNMEDIIMGKQPEKKQRELSTDPYAMKE
Ga0183755_10078869	F021188	GAG	MTEELDIIWIPEGEKNHVFVENTPDGETIPVDLPASTVDRLCKAKYGHTNWVRMGAVTVEELLHNPHVIDYLEGIIYFKNPRMV