NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1007036

Scaffold Ga0183755_1007036


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1007036 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4919
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010829Metagenome / Metatranscriptome298Y
F041432Metagenome / Metatranscriptome160N
F045695Metagenome / Metatranscriptome152Y
F061900Metagenome / Metatranscriptome131N
F084706Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100703611F061900GGAGMTDSSSKEEDIHMAAELMEAKMALGQARTQMTHMLRMGNFHIEIVPNQDIDIEEFFTKTMDNIWDRFGKDALEVKVSGMEGMELKKPQGMHQ
Ga0183755_100703612F084706AGGMKAPEVGTTLGKCIFDNGVIVEGHSIRSQYATLRQGRWICGECLLDMLPTALEATESHMKAEAEKKDMLIAKVKKYGWSVNPATGKLEKL
Ga0183755_100703613F041432AGGAGMSENEKTELKFLGGLFRNESKKGDVYYSGKSEDGTQWVLFRNAYWKEGETNKPYFRLHTRVPVGSGPSTAQD
Ga0183755_100703615F010829GAGMGNLADHRRLREEQGLYKEDPGDGKYTKDELDYIPFLGNNPSEERPAVYTARFQVTEGTIELEAKRSGGKLYLTCLADEKHNRAIFECVERFVAAIFDGTAREISEAQPDDSEIMKLKKHIEQLEKDNEEHIETLEQLKSIMK
Ga0183755_10070369F045695N/AMNDKRQLFLNIWNKKNSPTRDSIKAKLENRGIEATELNCYEFWMGYIKPWADTRGNIHHINPFRNEAFMRSIGRNKYGTPFKLANRNKKKKRKYGK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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