Scaffold Ga0183755_1005689

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1005689
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5726
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026571	Metagenome / Metatranscriptome	197	N
F036728	Metagenome / Metatranscriptome	169	N
F087228	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10056893	F087228	AGG	MKRTGYKYIVELSRYNKQERTIYIDDNNNYVYKWDNRIFEIWDHQYDLVTIPIEKMTRGMLNEYTKSLYKNLKSWLERSKEQEHKLDEYKKFINMFVAKESLEYLDKLDEKLDEYEVNIELFDDQKLESVAK
Ga0183755_10056894	F036728	N/A	MVVKQKIELPLDCRYIFVNYNKSLKPFRSTKEVLHFIEGNRLEIVDQQTFNQSYVVVVKKADSFL
Ga0183755_10056899	F026571	AGG	MKKYRVNVVGTKYITTDTEDKAIQSTQDMLDHIHKSLNMQVFSIAEVIETK