Scaffold Ga0183755_1004665

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1004665
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6505
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F012403	Metagenome / Metatranscriptome	281	Y
F032478	Metagenome / Metatranscriptome	180	N
F046340	Metagenome	151	Y
F067120	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100466510	F002430	AGGAG	MITFNLPKKQVNAILVALDAEIEMQLGGRPVDWESFPEVAALLMAYYTTRCKFEEDGWPIAAYEDDPTDD
Ga0183755_10046652	F012403	GGAG	MRIKPINPVAKALAQSRRRSSVVPDKKKYNRKKDKHDANQAGKHEEPKDN
Ga0183755_10046653	F067120	AGGA	MQIKLENMKNQKTTKPEGKRDQWRSYNKRKQNVRRTARRNTQIAQEILL
Ga0183755_10046655	F032478	AGG	MYWTVGIKMDGISGVYDVHPQPLEQPIWNHAVEHALDMAQALYPEKHIELEFVKEYDYD
Ga0183755_10046658	F046340	AGGAG	MSDNYDSGFDLVLSDDERKELTYYYYGTCLPEYLSDKEEDLWYGLQVGDRMFDLNVWLDDQTEDINCTVYECDWIDDNWQTNCRHSWTLTEENDDA