Scaffold Ga0183755_1004644

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1004644
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6529
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010277	Metagenome	306	Y
F031295	Metagenome	183	N
F050005	Metagenome	146	Y
F098051	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100464410	F050005	AGGAGG	MYNKTNYPLYHEFKPIKIGNVLLNTSVDDILDQEIEETNIIINKLKDINQFLEV
Ga0183755_10046444	F098051	GAGG	MDKLKLKDLDQLKEWVDQMYWDFDRLSSSGQETLDKIAEKLGMESNADVENRINRNIADLQERNPTWTREQVYTEALKLG
Ga0183755_10046447	F031295	AGGA	MVRAEEKLHDVISSLQDIVNNWNRRGMKKIALENMINDLEVVDAELHDLKLPPITDDIQLDNRVCMFYVINQLKDMVTEKDDEQKIIQLTEFYNQLIFNLGINALHNHKNDWEDR
Ga0183755_10046448	F010277	GGAGG	MSKALKDKLEEVELFVGKQLQDYTNEQVIQKVRKEFGLQMYVDHAEELLLEFQQEVNMERMQSW