Scaffold Ga0183755_1004140

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1004140
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7036
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F010275	Metagenome / Metatranscriptome	306	Y
F024924	Metagenome	204	N
F037471	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100414011	F010275	GGAG	MSNNVNSTIMDNMRDNVHELWVIEGRPDLEDDCLQYCYDNIDKPVPIAMIEFLSQHCSQALSTEDLNFMEIDNA
Ga0183755_100414012	F037471	GGAG	MAQMRVKDQDLIVEQVISKIEADKLVKFKARDDVQSIQGVIEARIEIISRLVEEYKELEKSIKAEQQELKDLVQAFQKANGFEYSSYATKQGIWLDNLSTYGVSIPELNMVWQLPYKTKHDLTTKLRLQTMSGDFDVYKLIEELTAEFSS
Ga0183755_100414013	F002593	GGAG	MSKLIYSRNGSETTESIDNAQPQIRAIWNQAHRFGANIVRVRAEKNRFGADTGRTFNSFHHGKVSIYKQKDQVHESNALYFARKIPLTKVNKGMQILEVASSLDVQDTLDTVDAIQYYSETSFLERLWNRIRYGTPMSINS
Ga0183755_100414016	F024924	GGAG	MKKRLNKSDRALAQDKMAQLRHAKNRIVVSFNDEEKAKRYLRSEGYRYQEVYSFKEDRALLYKNFKNSWVKLASKFDYLNDNTMEMGTVWVIETI