Basic Information | |
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Taxon OID | 3300029448 Open in IMG/M |
Scaffold ID | Ga0183755_1003463 Open in IMG/M |
Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7888 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (76.19%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea: TARA_023 | |||||||
Coordinates | Lat. (o) | 42.1735 | Long. (o) | 17.7252 | Alt. (m) | Depth (m) | 55 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F017045 | Metagenome / Metatranscriptome | 243 | Y |
F035085 | Metagenome | 173 | Y |
F046989 | Metagenome | 150 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0183755_100346316 | F035085 | GAGG | MIKKIQERIDNFKGTDEKDKIKFEHIIKNMGAISSNHLKNIDTLPKQKWEDEKEYTHWDDRIKTYFLCYVDLIGETHFGDIKNVFGTLVKTKSGYSYTKKKTPKVPFHSDCLQIALYSKVLPTHTPFLTYASDSDYTIFTPDNCIELSKENLEHYYDELVLYQKCWETKLELANGDIKTLAKLCKPDFSEIRKNGFWWKGISPDIIKRFKGYYE |
Ga0183755_100346320 | F046989 | AGG | MKSFLILVLFSHPNLIYEKIEIKNFTNCDDAFESKAIWHENTNYKEGNNQVWGFYIYDNKQVVASYCKDQKGDWLL |
Ga0183755_10034639 | F017045 | AGGA | MSKSNSLLRRYDKLNKLHGEIMQKPINNKRQCIHSLKAFKKYIKTYRQIVCVENEDSKFIHAQT |
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