Scaffold Ga0183755_1003361

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1003361
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8015
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027808	Metagenome / Metatranscriptome	193	Y
F043147	Metagenome / Metatranscriptome	157	Y
F072121	Metagenome / Metatranscriptome	121	Y
F089559	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100336112	F072121	AGGAG	MLNDVSTAIIIMELRNRVFDQIEDPEPQYDALLSNLSGKRILELGAVLQEVPITTPAPKEVR
Ga0183755_100336115	F043147	GGAGG	VNKVPPVERDLLTGGLTFESASLWCQFLSEEFDWQNNRGLSEYYKRRSQELSRAPTGSLHDRRLEEAIKAWKR
Ga0183755_100336117	F027808	GGAG	MTDHEQQYDPQLQWVIDEVIFFITQQKHSDAVWFDVYETITGATADESWDEYQATLRADAEGEARFEQEKDNA
Ga0183755_10033616	F089559	AGGAG	MAKNIYTVEDFEERLSELTIGTESVQDIMEFVRSLEKRYQWQSKRCDVAANLLGHDMINECMMEEQ