Scaffold Ga0183755

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1003345 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029448 Open in IMG/M

Scaffold ID

Ga0183755_1003345 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8047
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (90.91%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8047

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (90.91%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_023

Coordinates

Lat. (^o)

42.1735

Long. (^o)

17.7252

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F021207	Metagenome	220	Y
F054940	Metagenome	139	Y
F105326	Metagenome	100	Y
F105336	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100334514	F008925	AGGAG	MTTKSKPTINAVTLNLINKLKKIDDTINEGAWEYINIGDVIRVQDAFAEVISYYDLKKEGGVHDYGADKGKYQQFWHSDYVCHTNPKAFNPSKVEEDDE
Ga0183755_100334516	F012581	GGA	MAKYTLYAKRVYYYRKDINAQDMKSAEKRGADYEADDNPERLFEPSGTEFYITSIEESDD
Ga0183755_100334517	F013187	GAGG	MPTKKIKKKPRKNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETRDMING
Ga0183755_100334518	F105326	GGAG	MEQRRNLTPKEHWELHQSLWNMLGCDMQLKHKNKNTVVYVDRKSKRQYTYSALGFIEEKRYANKKD
Ga0183755_100334519	F021207	AGGAG	MSKRFKQVNIQQFAILVQEVDISKYSQEEYVDIIEEIYMTIFRHNTDGDFVIPTMPNEEGNWKVHKSSTTKEEVMKLINEGRVTWNKDVI
Ga0183755_100334521	F105336	GGAG	MKLRQEQITRAEQILSDLERKVEEMEQQDYITYDLGKDLQNISFMINMLREEIKDE
Ga0183755_10033455	F054940	GAG	MNLLEDEIKELIKERYYEYLEEGYESFEAMELAKRDVLETKEVEIDAYNKIYDSSIEVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183755_1003345

Overview

Ecosystem & Geography

Associated Families

Sequences