NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1003097

Scaffold Ga0183755_1003097


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1003097 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8467
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F039872Metagenome163Y
F092017Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0183755_10030972F003693AGGMISSKLALIDISADNNDSLGVKAEGMLLCGVQFPAAMTGSAITFDFSLDNSTWVDVKETDGTEVSYTVSAGDVVRVDPSGWAFASNGYLRVSSNGTEAADRKIVLHFRHS
Ga0183755_10030973F092017AGGAGMGMLLILKEGRNLNIESIPDQPLEPSFPIVDPNDNANDGWFGLGAFGQAIFAAELVEEGA
Ga0183755_10030974F039872AGAAGGMSTDIKGLVDRVYREYLEPMDDLTSYTTLNQGGTLSDSATTLTFNGDLLTQEEEDAMDAGTIIECESELMRCVSLDTVNNQVTVVRGVRGTSNVQHADGSIIKIAPPFPRQVVFDAVKDQINNLFPTLFAVETQSIVASTGYTLIGSYDSPGTNNYLISILSAISQYTDFSAGADTTGVIFSPVTSSLVELPNPFTYTDNDGVSRTITYTTGPNVVHAIQFSNIAAGHTTHVTFKKKFIEPTAESDTLATVGLEQEYEPIIMAGVAAQLLSGRDIPTATADYISDQLSVSAFPVGSASNIRNSLLQYQQLLVNQARKHLRAKYPEAVSVDGKVFGIQA
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