Scaffold Ga0183755_1001955

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1001955
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11198
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019909	Metagenome / Metatranscriptome	227	Y
F020259	Metagenome	225	N
F024582	Metagenome / Metatranscriptome	205	Y
F068220	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100195511	F024582	N/A	MKTTHNTLTHLLGAWDRLEVVGTNPDNYKSILTNTFIDGGTRKIAIEYRFEEGGYMNAPYIYAFLVMYDQNGHRRSVIKNGSWGCHGEDMMEFKLWFAKKLSHANEVQELRIEDAQHNITNFLS
Ga0183755_100195515	F020259	N/A	MTEQTFTAVADWADRIQMMTQENRLINSQDVVHDVFGMLRDDEHFLPRL
Ga0183755_100195516	F019909	N/A	MKDFEQHIGHELPQEWIDYINAHTKDELYNQAQKLKFDSWCPILLANDSPELRKHLEEASELLFKYVDYIDSQLVTK
Ga0183755_100195517	F068220	N/A	MKLYASIHAVCGIAEGYSNTTVQFFKTLEQAKEHKAKLLQLLTREKHIDVTSLTDGTQDIVTFSRDEAEEEILKIVEVNPLYDIDKPDPANSSTREWLMWNQLDCEAMYNGEYLPTDMGCIKEATDALYGLHESIPLDEWAEFVGGIYYRGEAMLDADDKIIHFFRIPKSDTL