Scaffold Ga0183755_1001788

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1001788
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11853
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005071	Metagenome	413	Y
F056531	Metagenome	137	Y
F094400	Metagenome	106	N
F104039	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100178810	F056531	GAGG	MKSISKFTKRFLHNTKVREGDFNWDLFYNTKVREGDFNWDLYDMDYELTDQEEALRQLNGLIESIATGNDTYTLESFKSDVKEAIQDIDHG
Ga0183755_100178817	F094400	N/A	MKKKPQSETIYPMVLVSWYDAKDGETGWHSLEDIKKERLALCHSMGWMIYKDKEKTIIMADYSEFDDEKDGGRHIIIPSGWVKSIAFLDIHRMERN
Ga0183755_100178824	F104039	AGG	MIKKIVSGVTRFQEKNPQSGDVINRVRVHYTDGTIKEFDVIDWEITLQDGRRLWKKHEQSISEFK
Ga0183755_10017884	F005071	N/A	MTKINLSTIEKCILRDLIKIEIKSLVQFTGDYGKFKYYPKEYAEDLFKLGRKLRLDDQQKIKAKKLYND