Scaffold Ga0183755_1001188

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1001188
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15095
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019755	Metagenome / Metatranscriptome	228	Y
F028822	Metagenome / Metatranscriptome	190	Y
F063170	Metagenome	130	Y
F075434	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100118811	F063170	AGGA	MKKKTKKTKKLDVFAMMVKHMNEKTPVKQNSGRGIVPDSTISRIQDIYNGEKKEDV
Ga0183755_100118818	F028822	AGGAG	MAIFTNKKHTSGLYSKVSSAIKSDQMMSKGGKRKQSSQTSMGDRKFDPMLKISGNQGLQVKGTIDMMIAKAIK
Ga0183755_100118819	F019755	N/A	MAKKFSLDDPNDGSTVKTNLIVDEAENKFHIENYQDNASIKEILDANKVAQNEGAYKSKVLANEKGYRVARLPNIIVHQLAKRGIMTYAGKVLDKPRFFKWLNDSDNKDFRIYTGNL
Ga0183755_10011887	F075434	GAGG	MQIKYIATIKEWRDKKYGNTYFSASIDDIENEKEYKLIMQYGDSSLGEQQVKKYLGLKGFSSELPIKFITIPNCKQREVIKHGGE