Scaffold Ga0183755

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1000978 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029448 Open in IMG/M

Scaffold ID

Ga0183755_1000978 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16804
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (17.07%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16804

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (17.07%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)	Depth (m)	55
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_023

Coordinates

Lat. (^o)

42.1735

Long. (^o)

17.7252

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F024111	Metagenome / Metatranscriptome	207	Y
F029927	Metagenome	187	Y
F032639	Metagenome / Metatranscriptome	179	Y
F048249	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100097811	F029927	N/A	MQPVNTKSLFHVLCKTLDQLDRAEINVNQASAVSKVVGQCANLLNYELKRAALMTNDEFRLEHRNLESKNFDSLPE
Ga0183755_100097815	F032639	N/A	MKTKLIDEDGFYVGSELKWGMDDVRNVLERFGMATTTSKEDVERILIAAFQDNYRLMESIDEAIGNTITFMIDEKQLKTDEQ
Ga0183755_100097816	F009699	N/A	MITEDLNLQDMMTDKEAQAFMQKVDSSAQFWQELHDEDAPTMQIQGNTVPRCLYNLMVTKRDVNLYLVGLKPHRGWKIGDVKAYFGIKGGKQKVADAINAIHSELIGRFKEQNNEDKTD
Ga0183755_100097818	F020115	N/A	MMTYEQFEILRQWADRVANTANDTETNIRSIDLVHDIAGILANDDHFIPRL
Ga0183755_100097820	F018534	N/A	MALPTLTDFLTSWDKLIVTGMTPERNDSVMTVAPNGATVTIEYRHQINHMGVCSTIAYLVAYDSNGNRVSLRNQTYGCFEDEQKQFHQWFAKKVAGAVELDARRRQDLSDGIDMILA
Ga0183755_100097821	F048249	N/A	MKTSIFNTRIIRTGSKVLYRGSWGRDGQRIAEVIAIEQTQGPNEKYGDEVDAVGLDEHYVLTLNNGHWCYSYQVDGLVQPTENQSVTK
Ga0183755_100097825	F024111	N/A	MSQPIFAFVFPFGEHGGEFRCKRNFVDAESAANWAVDIILKEGDDYCYFKEVESADYVFEPACESHTVVRWADGDPTWEMYDVID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183755_1000978

Overview

Ecosystem & Geography

Associated Families

Sequences