Scaffold Ga0183755

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1000860 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029448 Open in IMG/M

Scaffold ID

Ga0183755_1000860 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17892
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (74.47%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

17892

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (74.47%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)	Depth (m)	55
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_023

Coordinates

Lat. (^o)

42.1735

Long. (^o)

17.7252

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F010532	Metagenome	302	N
F028971	Metagenome / Metatranscriptome	190	Y
F031261	Metagenome	183	Y
F051470	Metagenome	144	N
F068823	Metagenome	124	N
F071663	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100086025	F071663	AGGAG	MIDNLIEEIIAEIKRDIHTNNLFTLRETLGTLLKDKDNKYILTNYLSEFPELREEYKEVKDNDND
Ga0183755_100086027	F051470	AGGAGG	VSNDNKWIHDYYDERHEHYIKVLSVDIKDVKLVEAMADRMAMEDVNNLEMEG
Ga0183755_100086029	F068823	AGGAGG	MGTYNEYYFEKEDVEATLDKIGLLTRLLGIVYKEQGLDTIKYLVERNSNRKYNWLDDEMMEDIINTLEDKQYE
Ga0183755_100086030	F031261	GGAGG	MNRTRTYVMSVEKNSPEVLEQLNKLQEVRQGVRLLNRHSRRKHYVKCQGRWGRNNPDYNQRTIPFCPLDKAVKWDVYIYEK
Ga0183755_100086031	F010318	GAG	MNVDSDKPRYLECIYEAPITFDLEELGIDWDKVKDYYIKYGTLYVEFKDGSSAQHEGDIGDPDYKWAEEENILTEGWTLVEGLN
Ga0183755_100086032	F010532	GGAGG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWEKPTDVSEVDVIHRIEEHLSYMVSSYLNKSYEGINVE
Ga0183755_100086038	F028971	GAG	MITTKDIELTPMSKEEYRAWEDYVRKYNEDNPKDQICYELTWNKDEYKVKLLNLKIDNEGQE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183755_1000860

Overview

Ecosystem & Geography

Associated Families

Sequences